SNP Profiles of HUALLAGA 48 View Data

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_Input profile	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
1._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
2._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
3._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
4._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
5._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
6._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
7._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
8._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
9._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
10._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
11._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
12._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
13._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
14._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
15._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
16._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
17._GC-01-009-1-09	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
18._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
19._HUALLAGA_48	CC	AA	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG
20._HUALLAGA_48	CC	AG	GG	TT	TT	AC	TT	GG	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
1._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
2._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
3._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
4._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
5._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
6._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
7._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
8._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
9._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
10._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
11._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
12._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
13._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
14._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
15._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
16._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
17._GC-01-009-1-09	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
18._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
19._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC
20._HUALLAGA_48	CT	AA	GG	CT	CT	CG	TT	AA	CC	AA	GG	GG	CC	CC

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
1._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
2._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
3._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
4._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
5._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
6._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
7._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
8._GC-01-009-1-09	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
9._HUALLAGA_48	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
10._HUALLAGA_48	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
11._HUALLAGA_48	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
12._HUALLAGA_48	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
13._HUALLAGA_48	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
14._HUALLAGA_48	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
15._HUALLAGA_48	AA	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
16._GC-01-009-1-09	_	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
17._GC-01-009-1-09	AA	GG	CT	AG	_	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
18._HUALLAGA_48	AA	GG	CT	AG	_	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
19._HUALLAGA_48	_	GG	CT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X
20._HUALLAGA_48	AA	GG	TT	AG	GG	AA	CT	GT	CC	TT	GG	X_X	X_X	X_X

Input profile: HUALLAGA_48

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Mars Center for Cocoa Science, Brazil

Location: 1107 9

Dapeng Zhang, 2016

1._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP3

2._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

3._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

4._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

5._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

6._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

7._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._HUALLAGA_48 GC-01-009-1-09

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 16 > F

Dapeng Zhang, 2016

10._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 3

Dapeng Zhang, 2016

12._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 8

Dapeng Zhang, 2016

13._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 10

Dapeng Zhang, 2016

14._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 11

Dapeng Zhang, 2016

15._HUALLAGA_48

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 14

Dapeng Zhang, 2016

16._HUALLAGA_48 GC-01-009-1-09

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

17._HUALLAGA_48 GC-01-009-1-09

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._HUALLAGA_48

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 5

Dapeng Zhang, 2016

19._HUALLAGA_48

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1107 1 > FP

Dapeng Zhang, 2016

20._HUALLAGA_48

97.4 %
39 shared markers

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PERICT

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25